rs31189945 SNP Detail

Summary

• ID
  rs31189945
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152099951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCAAAA CTTCATGTGA
  CTCAGGCTGG CCTCAAACTT GCTTCGTAGC CTATAATTCC AGTACTGTGA GGCAGAGGCA
  GGAAATGAAG AGTTCTAGGA TGTATACACA CACACACACA CACACACACA CACACACACG
  GATGGAGGGA AGGGCAGGGA GAGTATTGTA GATCAGCCTT GACTATAGAA GCTTGCCTCA
  K
  CGAAAACAAG CTTCAAATCG CAATGCCTGT TTTGCCAACA AATGTTAGCA AGGCCATGGG
  TTGGGTTTCT CTCTTATGTT TACATATTAG TGCCGGGTGG TGGTGGTGCA CGCCTTTACT
  CCCAGCACTC GGGAGGCAGA GGCAGGCAGA TTTTTGATTT TGAGGCCAGC CTGGTCTACA
  AAGTGAGTTC CAGGCCAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45507624	mCV23507505	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss136102875	ENSMUSSNP5103134	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31189945					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152099951 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13949	CpG island 13949	253 bp proximal
Cpgi13950	CpG island 13950	981 bp proximal
Gm43857	predicted gene 43857	74 bp upstream
Gm66519	predicted gene, 66519	within coordinates
Rr587540	regulatory region 587540	567 bp distal
Rr587541	regulatory region 587541	480 bp distal
Rr587542	regulatory region 587542	353 bp proximal
Rr587543	regulatory region 587543	1199 bp proximal
Rr587544	regulatory region 587544	1587 bp proximal
Rr587545	regulatory region 587545	1647 bp proximal
Rr587546	regulatory region 587546	1736 bp proximal
Rr587547	regulatory region 587547	1880 bp proximal
Rr587548	regulatory region 587548	1926 bp proximal
Rr587549	regulatory region 587549	1961 bp proximal
Tssr32410	transcription start site region 32410	1130 bp upstream
Tssr32411	transcription start site region 32411	1677 bp upstream
Tssr32412	transcription start site region 32412	1747 bp upstream
Usp33	ubiquitin specific peptidase 33	697 bp downstream
Zzz3	zinc finger, ZZ domain containing 3	1159 bp upstream