rs31191378 SNP Detail

Summary

• ID
  rs31191378
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53496295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATGGGAACTG CAGTCCTGTG CAAGTGTAGC AAAGGAAGGG CCAGGAGCTG CTGTCCCGGC
  TGCAGCTGGA AAGGCCTCTT TCGAAAATTA ACAAAACAAG ACATTTTATG TTCCTTTCAG
  GTTTTCTGCA CAGGGTTTCA CTGGGAAACC CAGGCTGGTC TCCGACTCAC AGCCATCTGC
  CTACCTGCCT CCTGCGTGTT AGGAAAGGGA GGTACCACCA GGCAGTAAAA ATCCTATTTT
  TAAAATAAAA AATATTAATA TCCAGAGTCC AAATGTGCCA GGGAAGAGCA GAGAGATTAG
  W
  GGGGGAACCT CTGTTGATAG GGACCTAATG TTCACAGGCC AACAGTCCAG CACAGTTTCT
  CAGTAGTAAT TTCGGAGACA GCCCTTATAT TTCTGCCAAT GTGTTCCTGC CTCATCGTTC
  CCCTCCACAA AGCTCTTTTG TGTTTACAGA TCCTATTAAG TGGGCGTTTC TCAAAGTGAC
  ATCTCTGTGT CATCAAGGGC TTCAGAACTC TACACCAACT ATATTTCTGC TTCATATCTT
  TCCATATTTT ATGGTTATAG GAAATGAAAT GTGGACATGA ATCAAAGTTG AAGATAATTA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45506380	mCV24468531	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31191378					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53496295 () rs orientation: forward

Symbol	Name	Function Class
Frem2	Fras1 related extracellular matrix protein 2	Intron
Rr576723	regulatory region 576723	1286 bp proximal
Rr576724	regulatory region 576724	1374 bp proximal