rs31191516 SNP Detail

Summary

• ID
  rs31191516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61294425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCACTGT GAATTCCACA
  AGCATTTCTG AGATTTTAGG GAAGGCTTTA CGTGAGACCG GGCATGGCAA ACGTGGGAGG
  GCTGCACTTC TTCCTTTGGG ACAGGTAAGG TTCCACACAG CATCTTGGGA AGGCAGGGTG
  TGTGATGGGG ATTACCGGTC CATAGTTCAG ATAATTGCTG GCCCGTCTCT CTGCCCCGAA
  Y
  GCAAAAGGTT TTCCCCTTGT CTTGTGGGTT TTTCTGAGAG TTAAAATCCA CGGATGTCAT
  GTTCGCACTG AGGGTGATCC TCCCAGGGTC TTTAACACTC AGCAGCCTAC GCATAACCAC
  CCAAGCCAGT AACTAGGCGT TCCTCAGACT TTCCAGCTCT GGCGACATCT GTCTCAGTTA
  AGCAGATGTG GCGGGGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39263878	mCV24378450	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss51520193	NES14630187	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	C		T	C	C	C		C	C	C	C		T
ss139609641	ENSMUSSNP5716628	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss324650915	CHEV_14_61675813	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31191516					SNP	C	T	T	T	C	C	C	T	C	C	C	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51520193	NES14630187	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61294425 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6575	CpG island 6575	211 bp distal
Rr369842	regulatory region 369842	164 bp downstream