rs31191746 SNP Detail

Summary

• ID
  rs31191746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115434672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCTCCAA ACACACACAC
  ACACACACTA AAAGTAACTC TCAGACAAGC CCAGGTACCT GGAAAAAAGC AGAAATAAGA
  CTAGCAGACT CAGAGATCAG CCAAACTAGA AGAAACAAAA AAACAGCTGA GCTTCCTTAA
  GAGGCTTAGA TCACCTGAAA AGGGGACTCC CTCACCTGGT GAGCTAGTGT CCTGCAGCTT
  Y
  CCAGAACTGG CTCCCACCCT GAGATGGAGT TTTGTGATGC AGCTTTCTTT GAGTGGTTTC
  TTTCTGTAAC TGCTCACCAT ACTCCTGCAA GTAACACCAA TAAAAAAGCC ATTGGTTCAC
  CAAACTTTGA TGTGTTGTTC ATTCCCTGTC TGGGTTATAT AGATATTCAG ATCTCTACCA
  ATAAAATAAA TAAATAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45508034	mCV24998071	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss135663608	ENSMUSSNP5192363	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31191746					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115434672 () rs orientation: forward

Symbol	Name	Function Class
Gm40124	predicted gene, 40124	within coordinates
Rr367536	regulatory region 367536	1306 bp upstream
Rr367537	regulatory region 367537	1705 bp upstream
Rr583561	regulatory region 583561	275 bp proximal
Rr583562	regulatory region 583562	517 bp proximal
Rr583563	regulatory region 583563	1858 bp proximal
Tssr35264	transcription start site region 35264	487 bp downstream
Tssr35265	transcription start site region 35265	520 bp downstream