rs31191929 SNP Detail

Summary

• ID
  rs31191929
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:52223636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCA AGCAGTAGCT CCCCGGATCC
  W
  AACTTCGGAG CTCGGGCCCA CCCAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39264436	mCV24786729	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T	A
ss139498638	ENSMUSSNP3693873	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss324626446	CHEV_14_52605854	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31191929					SNP	A	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52223636 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef40	Rho guanine nucleotide exchange factor 40			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi6430	CpG island 6430			680 bp distal
Cpgi6431	CpG island 6431			73 bp distal
Gm16617	predicted gene, 16617			246 bp downstream
Rr491847	regulatory region 491847			1238 bp distal
Rr491848	regulatory region 491848			within coordinates
Tssr125437	transcription start site region 125437			1666 bp downstream
Tssr125438	transcription start site region 125438			1641 bp downstream
Tssr125439	transcription start site region 125439			1458 bp downstream
Tssr125440	transcription start site region 125440			1323 bp downstream
Tssr125441	transcription start site region 125441			1271 bp downstream