rs31193297 SNP Detail

Summary

• ID
  rs31193297
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146015326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTGTTC GAATGTCTGA
  GCTTATGGGG AAAACATCTC ATCCAAACGA CCACGCAGGC CACTTGCAAT GTACAAGAAA
  AGAAAATGAT AGAAACTCTG GAAAACGTTA GGTTTCTTAA TCTGTAACTT TAATAGATCG
  AATATTAATC TTTAAAAGCA TTGTTAAGCT CTAAATAGTT TTTTACGGCC CTCAGAAAAA
  M
  CATCTAAGGG TACCAAAGAG CATACTTTGA ACAGAAGCAA CATAAAAACA AAGCAAGCTT
  TCCATGCCTT CCATCCTGAA GGATCAGGGC CAGCGGAGAT GGTCAGCGGA TATAAATCGG
  TGTGAGAGTG TGAGGTCCAG CTGTGCTGTA GCAGAAGCTT GGGAGCCTCA CCGGTGAATG
  CCTGTATCCT GCGGGAAAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss47026280	NES10847573	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	C	C	C		C	A		A
ss136042969	ENSMUSSNP4191726	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			C
ss321009817	CHEV_3_145972535	CHEVERUD	SCREENING_POP	f	SNP								C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs31193297					SNP	C	A	C	A	C	C	C	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026280	NES10847573	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146015326 () rs orientation: forward

Symbol	Name	Function Class
Rr586996	regulatory region 586996	1357 bp proximal