rs31193299 SNP Detail

Summary

• ID
  rs31193299
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146015355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACATCT CATCCAAACG
  ACCACGCAGG CCACTTGCAA TGTACAAGAA AAGAAAATGA TAGAAACTCT GGAAAACGTT
  AGGTTTCTTA ATCTGTAACT TTAATAGATC GAATATTAAT CTTTAAAAGC ATTGTTAAGC
  TCTAAATAGT TTTTTACGGC CCTCAGAAAA ACCATCTAAG GGTACCAAAG AGCATACTTT
  K
  AACAGAAGCA ACATAAAAAC AAAGCAAGCT TTCCATGCCT TCCATCCTGA AGGATCAGGG
  CCAGCGGAGA TGGTCAGCGG ATATAAATCG GTGTGAGAGT GTGAGGTCCA GCTGTGCTGT
  AGCAGAAGCT TGGGAGCCTC ACCGGTGAAT GCCTGTATCC TGCGGGAAAG CATCCTTCCC
  CATGTGGGAG AGGTGGAGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47026282	NES10847574	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	T	G	T	G	G	G		G	T	T		T
ss136042972	ENSMUSSNP1190590	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					G
ss321009818	CHEV_3_145972564	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31193299					SNP	G	T	G	T	G	T	G	G	G	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026282	NES10847574	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146015355 () rs orientation: forward

Symbol	Name	Function Class
Rr586996	regulatory region 586996	1328 bp proximal