rs31193303 SNP Detail

Summary

• ID
  rs31193303
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146015547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACTTTGA ACAGAAGCAA
  CATAAAAACA AAGCAAGCTT TCCATGCCTT CCATCCTGAA GGATCAGGGC CAGCGGAGAT
  GGTCAGCGGA TATAAATCGG TGTGAGAGTG TGAGGTCCAG CTGTGCTGTA GCAGAAGCTT
  GGGAGCCTCA CCGGTGAATG CCTGTATCCT GCGGGAAAGC ATCCTTCCCC ATGTGGGAGA
  S
  GTGGAGTGCA AAGGCCTACA GTGGCTAAGC CATTGATGAT GGGCACTCTA TCAAACTTGG
  CTCCCTTCCT CTTTGTCTTT CCTCCCCAAC CCGTGGTGGG GTGAGGGTGG GTGAATGCGA
  CCATCAGACT AGCACCTGGG TGCCTACTTC TTTTGTTCGA TTTGATAAAT AAACCCCTTC
  CCCACAGGAC ACATGGCTCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss47026286	NES10847576	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	G	G		C
ss136042990	ENSMUSSNP2197580	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		G
ss321009824	CHEV_3_145972756	CHEVERUD	SCREENING_POP	f	SNP							C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs31193303					SNP	G	C	G	G	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026286	NES10847576	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146015547 () rs orientation: forward

Symbol	Name	Function Class
Rr586996	regulatory region 586996	1136 bp proximal