rs31193483 SNP Detail

Summary

• ID
  rs31193483
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154936362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCGAAAGAA ATGCAGGTCA GCTTCCAAAC ATTGACATCC
  TGCTTGGGCT AAAGAGATGG CACGTTTGTT GTCTTCCCCC CCTCCCCACT TTTTAGACAG
  R
  GACCCATGTA CCTCAGTTTG ACCTTGAATT TACTGTGTAG CTGAGAATGA CCTTGAACTT
  CGATCCTCCT CTCTCCACAC CTCAGATGCT GGATTTACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45006230	mCV24610401	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss145774535	ENSMUSSNP1142328	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31193483					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154936362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	729 bp distal
Gm41980	predicted gene, 41980	282 bp upstream
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	1024 bp upstream
Rr396410	regulatory region 396410	757 bp downstream
Tssr248	transcription start site region 248	1086 bp upstream
Tssr9521	transcription start site region 9521	906 bp downstream
Tssr9522	transcription start site region 9522	670 bp downstream
Tssr9523	transcription start site region 9523	1685 bp upstream
Tssr14331	transcription start site region 14331	1071 bp upstream
Tssr14332	transcription start site region 14332	1059 bp upstream
Tssr14333	transcription start site region 14333	1041 bp upstream