rs31193551 SNP Detail

Summary

• ID
  rs31193551
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51623645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTATAAAC TGGGTGGCAC
  TTACTCAGGT TCTGTGCCTC CCCGTTCTGT GATTTAGGCC AAATTACTTT TATCTCAAAG
  CTCTGATTGA TTGATCTACA CAGTAGGTAT GTGGGGACTT TGCTCCCAGA TTAGCTGTAA
  GAATTTAAAA GATCCTATTT ACAAAGTGCC AGAAACCTAA TGTGATAAGA ACGCTCATTG
  Y
  TATCAGGTGT TAGGGGTATT GAAGGTTGGT AATCTATATG CCTGTCATTC ATTACTACCT
  AACAGGAACA AAGAACAACA ACAACAACAA CAAAAACAGC AACAATAACA AAACCCACAT
  AACTGATTTC AGCTGGGTGA ATCTTAGCAG TAGGTTGATG CTGATCTGTT CCGTAGTTCT
  CTAAGGGCCA CTTAGAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45006130	mCV23215988	ABI	CRAMUS_MOUSE	f	SNP	T	C					C
ss47349878	NES11071141	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C		C	C	C	T	T	C	T	T
ss149111634	ENSMUSSNP6588559	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31193551					SNP	T	C	C	C	C	C	C	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47349878	NES11071141	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51623645 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Gm70189	predicted gene, 70189	902 bp upstream
Rr366895	regulatory region 366895	445 bp upstream
Tssr6632	transcription start site region 6632	866 bp upstream
Tssr6633	transcription start site region 6633	927 bp upstream
Tssr11575	transcription start site region 11575	485 bp downstream
Tssr11576	transcription start site region 11576	776 bp downstream