rs31193879 SNP Detail

Summary

• ID
  rs31193879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127684639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCACCCA TTCCCATTTT
  TTTGGCCCTG GCATTCCCCT GTACTGGGGC ATATAAAGTT TGCGTGTCCA ATGGGCCTCT
  CTTTCCACTG ACATTTTAAG GCAGATAATA CTTTGCTGTG GTATTGGTTC CCTTCTATCA
  CTTTGACCAA AGTCCTTGAT ATAAACACCT TAAAGGACAA GGGTTCATTT TGGCTCACTG
  R
  TTGGGATTTA GGATGCAGAG GGCATGGGAG AGAAGTTTAC ATCAGGCAGC CAGAGCAGAC
  AAAAGAGGCC TCTAGGAAGG GGTTTTCCTC AGCTCCCAGT GTTATCACAT TATGAATCCA
  TCTGGGTGAG AGCTTTATGA TCTACCTCTA ACCTTCTGTG ACCTTGCAGA CTACCCAGAG
  GTATGTTTTA CCAGTGTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45509490	mCV23455655	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss135874322	ENSMUSSNP3241166	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss320957938	CHEV_3_127593908	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31193879					SNP	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127684639 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	1066 bp distal
Rr584893	regulatory region 584893	669 bp distal
Rr584894	regulatory region 584894	within coordinates