rs31194117 SNP Detail

Summary

• ID
  rs31194117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146016021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCATCCG GACCACAGAT
  TTCCACTTGT TACCAAGTGT GCCATCTGGT TAGGACTTCC TCCCTTGAAT GTGGACAGAT
  CTGTAACTAT TTTATATATA ACAGTGTGAG AACAGCCGCA TGCCCTTTCT GGATTATGCG
  TGCACGATGA TAATATTAAT TTTGCTAGGA GACACGCTCT TTGCTGACTG TGATAAAGAC
  R
  CAGGCTGCTG TGCTGAGACC ATGGGTGGAA ACGAAGCAGA CTGGATGTTA ATTAATCGTT
  CTCCCTCAAC AGCCTGCGGA GGACTCTCCA GCGCTGTGAA AACTAGCCAA CCATGGGGAA
  GCTTGATTCA AGTTCAAGGC CGATTCCCCT GCATCCCGCA ACCAAAGCCT ACGGTGACTT
  CTTCAGTAAG ATCTTTAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss47026290	NES10847578	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	G	G	G		G
ss136042996	ENSMUSSNP1070389	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321009826	CHEV_3_145973230	CHEVERUD	SCREENING_POP	f	SNP									A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs31194117					SNP	G	A	G	A	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026290	NES10847578	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146016021 () rs orientation: forward

Symbol	Name	Function Class
D3Mit292	DNA segment, Chr 3, Massachusetts Institute of Technology 292	1530 bp proximal
Rr586996	regulatory region 586996	662 bp proximal