rs31194120 SNP Detail

Summary

• ID
  rs31194120
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146016265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCCCTGCA TCCCGCAACC AAAGCCTACG GTGACTTCTT
  CAGTAAGATC TTTAGCATCC AGTTCTGGTG GGCAACCAAC AGTTTGCTTC ATTTTTTTTT
  W
  AACTCTGCTT ATGAATGAGA TTGCCTTATG ATGGTCCTGC TTTGTATTGT TTATTTGATG
  TTAGAATCAA TGTTACACTA ACTTTATGAC AAGTAGGCAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss47026294	NES10847509	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs31194120					SNP	A	A	T	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026294	NES10847509	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146016265 () rs orientation: forward

Symbol	Name	Function Class
D3Mit292	DNA segment, Chr 3, Massachusetts Institute of Technology 292	1286 bp proximal
Rr586996	regulatory region 586996	418 bp proximal