rs31194411 SNP Detail

Summary

• ID
  rs31194411
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51106543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAC AGCTGAAAAG GAGACCATAA
  K
  AACATGGAGG CCAGCCTGGG CTACA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss39264073	mCV25390478	ABI	CRAMUS_MOUSE	f	SNP		G	T
ss139469919	ENSMUSSNP6161298	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss324619652	CHEV_14_51488761	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31194411					SNP	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51106543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6408	CpG island 6408	1191 bp proximal
Gm26782	predicted gene, 26782	1166 bp upstream
Rr404075	regulatory region 404075	1428 bp upstream
Rr491714	regulatory region 491714	893 bp proximal
Rr491715	regulatory region 491715	1288 bp proximal
Rr491716	regulatory region 491716	1464 bp proximal
Tep1	telomerase associated protein 1	within coordinates
Tssr125373	transcription start site region 125373	1269 bp upstream
Tssr128379	transcription start site region 128379	264 bp downstream
Tssr128380	transcription start site region 128380	1413 bp downstream
Tssr128381	transcription start site region 128381	1471 bp downstream