rs31194849 SNP Detail

Summary

• ID
  rs31194849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24098428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCACTTG GGAGGCAGAG
  GCAGGCGGAT TTCTGAGTTT GAGACCAGCC TGGTCTACAG AGTGAGTTCC AGGACAGCCA
  GGGCTATACA GAGAAACCCT GTCTCAAAAC AAACAAACAA ACAAACAAAC AAACAAACAA
  ATAACCAAGA GAGCTGATTG TGGCGGCACA CACAGGTAGG TTATGCTGAA GAGGCAGACA
  Y
  AGGAGGGTAA GTTTGAGGTC AGGCTGATGG ACTCACGGTT TTTTTTCTTT AAGAAAGGAA
  AAGCAATAGG GGAGGTGGAA CTTCTGCCTC TCAGCTGTCT TTCCATTGGG TGACTGCACC
  CTCTGCCCAG TGGCCTTCCA GCTGCTTCAG GCTGTGCCCC TAGTCCTTTG AATGTTTGCC
  CCTTCTGTAG CCCTGCGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46006720	mCV25416633	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss148598580	ENSMUSSNP1552189	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31194849					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24098428 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	183 bp proximal
Gm74022	predicted gene, 74022	8 bp downstream
Rr643435	regulatory region 643435	1620 bp distal
Rr643436	regulatory region 643436	754 bp distal
Rr643437	regulatory region 643437	126 bp proximal
Rr643438	regulatory region 643438	627 bp proximal
Rr643439	regulatory region 643439	922 bp proximal
Rr643440	regulatory region 643440	1570 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	678 bp upstream
Tssr64959	transcription start site region 64959	603 bp upstream
Tssr64960	transcription start site region 64960	671 bp upstream
Tssr64961	transcription start site region 64961	810 bp upstream
Tssr64962	transcription start site region 64962	956 bp upstream
Tssr64963	transcription start site region 64963	974 bp upstream
Tssr64964	transcription start site region 64964	1010 bp upstream
Tssr71075	transcription start site region 71075	855 bp downstream