rs31194876 SNP Detail

Summary

• ID
  rs31194876
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165667703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTCAAGATC TGAGGGAGTA AGACACATCA GCCTCTGCAC
  CATCAGCCTC TCCACCATCA GCTTCTGCAC CATCATCAGC CTCTGCACCA TCAGCCTCTG
  S
  ACCATCATCA GCCTCTGCAC CATCAGCCTC TGCAGCCACT TGGGCATGAG GAGAACCCTG
  TGGCCAGAGG ACCTGGGGTC TGTCTGTGTA CGTTAGGTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45007292	mCV24492593	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31194876					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165667703 () rs orientation: forward

Symbol	Name	Function Class
Cd247	CD247 antigen	within coordinates
Cpgi956	CpG island 956	745 bp proximal
Gm71096	predicted gene, 71096	within coordinates
Gm71107	predicted gene, 71107	925 bp upstream
Rr372389	regulatory region 372389	1869 bp upstream
Rr422481	regulatory region 422481	1901 bp distal
Rr422482	regulatory region 422482	613 bp distal
Rr422483	regulatory region 422483	524 bp proximal
Rr422484	regulatory region 422484	810 bp proximal
Rr422485	regulatory region 422485	936 bp proximal
Tssr268	transcription start site region 268	1206 bp downstream
Tssr269	transcription start site region 269	236 bp upstream
Tssr9850	transcription start site region 9850	1458 bp downstream
Tssr9851	transcription start site region 9851	922 bp upstream
Tssr9852	transcription start site region 9852	1535 bp upstream