rs31194916 SNP Detail

Summary

• ID
  rs31194916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146016759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGACTTCT CAAGGAGAAT
  TTCTCTTTGA ACAGAGCCAA CGAATAAGGA ATTCTATAGT TTCCCCTAGA GAGCACCCTC
  TGCAGCTTGG CACACCCTGG GACACTGTAT TTGGCTCTAT CCAAAGCACA GAAGCCAAGA
  GGACTGTCTA GCAGGTTTGG GGATGTCAAA GGCTTGAGTC AGTTCCCAAA AGTGCAGGAA
  Y
  CAGGAATAGA TGAGTGTTTT CTCTGCATAG CCAGATGTGC TCAAAAGAGC TGGCAATCGG
  TCGGTCATGT TAGATTAATC CAAATACAGT GAAGAAGTTG AAGAAGTGAA GAGCATTCAT
  TTCAGGAGAG ACTGGGTATG CACAGCGCTT CCCTTGGCCC TAAGGCAGAC AACTTCCAGA
  CCGCAGTCAG TCCCTTCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47026300	NES10847512	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	C	C	C		C		T	T		T
ss136043008	ENSMUSSNP1580659	ENSEMBL	ENSEMBL_Sanger	f	SNP						C					C
ss321009831	CHEV_3_145973968	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31194916					SNP	C	T	C	T	C	C	C	C	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026300	NES10847512	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146016759 () rs orientation: forward

Symbol	Name	Function Class
D3Mit292	DNA segment, Chr 3, Massachusetts Institute of Technology 292	792 bp proximal
Rr586996	regulatory region 586996	within coordinates