rs31194921 SNP Detail

Summary

• ID
  rs31194921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146017013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCGGTCG GTCATGTTAG
  ATTAATCCAA ATACAGTGAA GAAGTTGAAG AAGTGAAGAG CATTCATTTC AGGAGAGACT
  GGGTATGCAC AGCGCTTCCC TTGGCCCTAA GGCAGACAAC TTCCAGACCG CAGTCAGTCC
  CTTCATTCAG ATCAAAAGAA ACCAGGCCTT GTGGGGGAGG AAAAACAGGT TCTCCGAAGT
  Y
  CAGATGAAAG AGGTCTGAGA AAGAATCGGT TTCAAATCCC TGGCTGGTCC AGTGATTGAG
  AGGCCCTGAT ACCAACACCA ATTAAGTAAG CAGCGGCGGG AGGGGCTGGG GAATGTGCCC
  GTGACTAAGG ATTGTCTTTC AGCAACAGTG CACCCTTTTA TTCTCTGTTC TGTTTTGCCA
  GCTGTTGCCT GTTGGGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47026306	NES10847517	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	C		T	T	T
ss136043020	ENSMUSSNP986737	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31194921					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026306	NES10847517	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146017013 () rs orientation: forward

Symbol	Name	Function Class
D3Mit292	DNA segment, Chr 3, Massachusetts Institute of Technology 292	538 bp proximal
Rr586996	regulatory region 586996	within coordinates