rs31195743 SNP Detail

Summary

• ID
  rs31195743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79437341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCACTGA ACCACTGAGT
  TCCCCTGATC ACTGAGTCAG ACATGAAGAC AGAAGATAGC ACACTTGTGC TGTGGATGAC
  ACAGCCAACA CGTGTCAATC AGACTAAAGC AGCTCACCAC TGATGTGAGC AGAGTCCGGC
  TGGTGGAGAG AGGGAAGACA TGTTCAACTG GCTGCTGACT GCTATGCTCC TCTGGATGGT
  R
  CCAACAAAGC TGGTATCAAC TGAGTGCAGC TAGAACATTC TGAATACACG TATGTTTCGA
  CCATAAAGGC ATTTTTACTG CACAAAACTC AAATACAGAA AATGTATCTT TAATCCTTTC
  AAGCACTAGG AACAAAAAAT TTTAAAAAGT TAAAGGGGGG AAAAAAAACC AGGTTGCAAA
  GCATTCTGAT ATTTAAAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45508945	mCV24189771	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A		A
ss47031398	NES10775874	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	A	A	A	A	A	A
ss135372470	ENSMUSSNP2342609	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31195743					SNP	G	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031398	NES10775874	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79437341 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	1020 bp proximal
Rr375221	regulatory region 375221	1262 bp upstream
Rr578535	regulatory region 578535	1711 bp distal
Rr578536	regulatory region 578536	1390 bp distal
Rr578537	regulatory region 578537	within coordinates
Rr578538	regulatory region 578538	1514 bp proximal
Tssr29582	transcription start site region 29582	64 bp downstream
Tssr29583	transcription start site region 29583	1976 bp upstream
Tssr33705	transcription start site region 33705	1625 bp downstream
Tssr33706	transcription start site region 33706	1643 bp downstream
Tssr33707	transcription start site region 33707	1661 bp downstream
Tssr33708	transcription start site region 33708	1683 bp downstream
Tssr33709	transcription start site region 33709	1703 bp downstream
Tssr33710	transcription start site region 33710	1724 bp downstream
Tssr33711	transcription start site region 33711	1759 bp downstream
Tssr33712	transcription start site region 33712	1797 bp downstream
Tssr33713	transcription start site region 33713	1840 bp downstream