rs31195770 SNP Detail

Summary

• ID
  rs31195770
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127292484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACAACCC CCCCCCCGGC
  ACCCAGCACC CACCTGACGG ATCCGCGGGG GGTTCTGCGG GGTGCAGGCC CCTCCCTCCG
  GGCCAGGGGA GGTGGGAGAA GCCATGTCCA CGCTCTCGGA ACTCCTTCCC TCGGTCAAGT
  CCGGCTGTCC CGCGTGTCCT CGTCTCTTCC GCTCCCGGCC TGCGGCGTTC GGGCTCACCC
  R
  GGGACCCGCG TGCTTCTAGG CGACCGCAGA AGGTCGGCCT TGGCCGCGAT CGCCCGTGGA
  GACCTGCTGC CCGAGCCCAC CTACCTCTGC GCGAGGTGCC GTGGGGCCAT GGTGCGCCGA
  GTGGGCTGCG GGCTGGGCCG GCGACAAGCG CTAAGCGACT GCTGCTGGTG GCGCGGGGAG
  AAAGAGGAGG GCTTCTTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45509244	mCV24304153	ABI	CRAMUS_MOUSE	f	SNP		A							G
ss61079244	NES16586983	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	A	A	G	G	G		G	G	A		G
ss135865095	ENSMUSSNP1703656	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss320954687	CHEV_3_127201753	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31195770					SNP	A	A	A	G	A	G	A	A	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079244	NES16586983	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127292484 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	within coordinates
Rr584800	regulatory region 584800	156 bp proximal
Tssr35576	transcription start site region 35576	151 bp downstream
Tssr35577	transcription start site region 35577	214 bp downstream
Tssr35578	transcription start site region 35578	241 bp downstream
Tssr35579	transcription start site region 35579	260 bp downstream