rs31196665 SNP Detail

Summary

• ID
  rs31196665
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18911278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGCTTG GGAATAGTAA
  AACAGCAGAA GACTTTCTGT ACACTGCACT GTCTTCAGCT TTGCCTCTGC CCCCTCTCCC
  CACCCCAGGT AGAATCCTCT TCTCCCCTAG ACAAATGTGT ATGGCGCCAG TAGGGCCATT
  TTAGTACGAG GGGAGCTGGG CTGGAGGAGT GGAGAGGTAA AGAGACGCGG AGAGTGGACA
  S
  TGGTCTCTAG GCCAGGAAAA CGTCCAGGAG GAAGCCAAGA GCTTGAGTCA TGGGGTGGGA
  CCATCAGGCC AAGCAAGGCC TCAGATGAAA GCTGACGACC GTTCAGGGTC AATGTGCCCC
  CATGTCAATC AGGGGGCCTT GCCAAAGGAT CATCTCAGAG TTTGGAGGTC ACTCCCTTGG
  GCACACAAAC ACTTTGCTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46007896	mCV25048397	ABI	CRAMUS_MOUSE	f	SNP		G	C					C
ss60972634	NES16155334	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	G	G	C	C	C	C	G	G	G	C
ss148469603	ENSMUSSNP3831862	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31196665					SNP	G	G	C	C	G	G	C	C	C	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60972634	NES16155334	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18911278 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	543 bp distal
Cpgi18451	CpG island 18451	772 bp proximal
Cpgi18452	CpG island 18452	1604 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Gm71808	predicted gene, 71808	742 bp upstream
Rr155272	regulatory region 155272	923 bp proximal
Rr167138	regulatory region 167138	within coordinates
Tssr64790	transcription start site region 64790	913 bp downstream
Tssr64791	transcription start site region 64791	879 bp downstream
Tssr64792	transcription start site region 64792	841 bp downstream
Tssr64793	transcription start site region 64793	816 bp downstream
Tssr64794	transcription start site region 64794	660 bp downstream
Tssr64795	transcription start site region 64795	850 bp upstream
Tssr64796	transcription start site region 64796	1628 bp upstream