rs31196887 SNP Detail

Summary

• ID
  rs31196887
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12656707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGT CCATGTACCA GCTGATTAGC
  K
  GGGTGACTGC CGAGTTACTT TAGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46007409	mCV24394437	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss148341431	ENSMUSSNP2470624	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
ss322106847	CHEV_7_13508129	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31196887					SNP	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12656707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	within coordinates
Gm57203	predicted gene, 57203	653 bp upstream
Rps5	ribosomal protein S5	within coordinates
Rr368230	regulatory region 368230	532 bp downstream
Rr642402	regulatory region 642402	690 bp distal
Rr642403	regulatory region 642403	480 bp distal
Rr642404	regulatory region 642404	383 bp distal
Tssr64485	transcription start site region 64485	460 bp downstream
Tssr64486	transcription start site region 64486	174 bp upstream
Tssr70626	transcription start site region 70626	684 bp upstream