rs31196889 SNP Detail

Summary

• ID
  rs31196889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127571642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAGCAGT GGAGGTGGTG
  GAGGGGGTGG TGGAGGTGAG GAAGTAGCTT TAGTTCTATC TTCTTATTCT CCAAATTTGC
  CCATATCCTA AAAAAGTGGC TTTTTTGTTT ACTTGGTTCC TAATGTTTAC TGTCCTTTCA
  GTGGTACCAT TGACCCTTTC CATGATGCTT CACATCCCTT CACTTTTGTT GCTGAAAACT
  R
  AAACAAATTT GTGTATGCTA AGCATACATG ACTACTAAGC ACCCCTCCTT ACATTAAAAA
  GCATTCTTTT GTTTTCCTTA CAGGCAACTA TGGCCAAGAT CAGTCCTCTA TGAGTGGTGG
  CGGTGGCGGT GGTGGTTATG GCAATCAGGA CCAGAGTGGT GGCGGCGGCG GCGGCTACGG
  GGGAGGCCAA CAGGATCGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46007411	mCV23385180	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss145883392	ENSMUSSNP2742607	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31196889					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127571642 () rs orientation: forward

Symbol	Name	Function Class
Fus	fused in sarcoma	within coordinates
Tssr69327	transcription start site region 69327	1359 bp downstream
Tssr69328	transcription start site region 69328	660 bp downstream
Tssr69329	transcription start site region 69329	1155 bp upstream
Tssr69330	transcription start site region 69330	1923 bp upstream