rs31197006 SNP Detail

Summary

• ID
  rs31197006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30253660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAGGGGAC AGTCTACACA AGTCCTCGGC AGCAGCACTG
  TAACCTATGT ATCATAGAGA GTGCTGGGTC CCAGAAGCCA AGACCCCTAT CCGATCGACG
  Y
  CCCACCCCTA CCCGCCATGT GTGCAGGTGT CCACGGACTC TGGGTATTTT TCCGTGCTGC
  TGGATGTGAA GCACTTCTTG CCAGAGGAAA TCTCTGTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss46007509	mCV25394720	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss148682368	ENSMUSSNP4344473	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss322135224	CHEV_7_31339254	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs31197006					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30253660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	1584 bp distal
Cpgi18809	CpG island 18809	701 bp distal
Cpgi18810	CpG island 18810	within coordinates
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	1206 bp downstream
Mir9769	microRNA 9769	1331 bp downstream
Proser3	proline and serine rich 3	1936 bp upstream
Rr400242	regulatory region 400242	1743 bp downstream
Tssr65779	transcription start site region 65779	1671 bp downstream
Tssr65780	transcription start site region 65780	963 bp downstream
Tssr65781	transcription start site region 65781	926 bp downstream
Tssr65782	transcription start site region 65782	537 bp upstream
Tssr65783	transcription start site region 65783	612 bp upstream
Tssr65784	transcription start site region 65784	636 bp upstream
Tssr65785	transcription start site region 65785	688 bp upstream
Tssr65786	transcription start site region 65786	706 bp upstream
Tssr65787	transcription start site region 65787	800 bp upstream
Tssr71787	transcription start site region 71787	1919 bp upstream
Tssr71788	transcription start site region 71788	1860 bp upstream
Tssr71789	transcription start site region 71789	430 bp downstream
Tssr71790	transcription start site region 71790	542 bp downstream