rs31197533 SNP Detail

Summary

• ID
  rs31197533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31243648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGAGAT TTGTTCATTT
  AATTATTTTT CTTAGGATCA GGGATTAAAT TTAATCCTGC ATGCGAGGTA AACACTCTAC
  ACTCCTCCAC TGAGCTACAA CCCTAGGAAA TTCTTATTGC ATTTTGTTGT TATAGGGTCT
  CGGGTATCTC AGGGTGGACT TGAACTCATT ACATGGTGAC GGGTGACCTG AATCTTCCTC
  Y
  TTCTGCCTCC TGAGTGCTAG GATTACAGCT GTGGGCCGTT AGGCCTGATA TACGTGGTGC
  TAGGGACGGG ACCCTAGGTT TCTTGCATAC TAGGCAAGTG CTTACACATT CAGTTCTCAC
  AAGTCCCTTA TGTTGGTGTT TAAGAACGTA TCTGTTTTCA GACAAGTGAA ATACATTTCC
  TGGGGGCTGG AGAGATGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45508673	mCV24748316	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss134734504	ENSMUSSNP1955086	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31197533					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31243648 () rs orientation: forward

Symbol	Name	Function Class
Rr80372	regulatory region 80372	1554 bp proximal