rs31197979 SNP Detail

Summary

• ID
  rs31197979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:38104984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAG ATCTTCTTGG ATCTTAAAAC
  Y
  CTTTCTTAGG AAGTTAAAAA CCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45007137	mCV27587538	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss146361547	ENSMUSSNP615712	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss325801278	CHEV_19_38191026	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31197979					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38104984 () rs orientation: forward

Symbol	Name	Function Class
Rbp4	retinol binding protein 4, plasma	93 bp downstream
Tssr156244	transcription start site region 156244	214 bp upstream
Tssr156245	transcription start site region 156245	1779 bp upstream
Tssr159111	transcription start site region 159111	237 bp downstream
Tssr159112	transcription start site region 159112	276 bp downstream
Tssr159113	transcription start site region 159113	331 bp downstream
Tssr159114	transcription start site region 159114	1771 bp downstream
Tssr159115	transcription start site region 159115	1810 bp downstream
Tssr159116	transcription start site region 159116	1846 bp downstream
Tssr159117	transcription start site region 159117	1944 bp downstream