rs31198344 SNP Detail

Summary

• ID
  rs31198344
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26385562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTCTAAT TCCTGTCAAA
  CTAAGAGGCG GAACCAAGCC CAGAAGTAGC CTCAAGGCCT GGAGAGAGCA GAGCAGAGAG
  CCGACTCCAC ACTCCAGCCA AGGCTCAAGA AAGGCTTTGC TTCTGGAGGC GGCATTGTTC
  CTCCATCCGC TCAGCCTCCG CGTCTCCCCT CCGCGGACTC TCAGAATCAC TGCCTTTCTC
  R
  GGTACCTCTC CGCCGACCTC CGGGATCTGG GTGCCTGGGT CCCAAGGCGC ACCCAAGCAG
  GCTCACTGCA GAGGCTGGGG CGCCGCTCGG AAGACTAGGA GCCTCCGCAC GAGTCCGCCC
  CGACCAGGGC AGCGCGCAGC GCACACTCAG TGTCTCACTC CTCTCGGCTT CCCTGGCTCC
  CACGGACTCG GTTGGCCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45510124	mCV22681622	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss51444666	NES14435656	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A		G	G	G	G	G	G	G	G	G
ss134693995	ENSMUSSNP6874661	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31198344					SNP	G	G	A	A	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51444666	NES14435656	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26385562 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	within coordinates
Cpgi13015	CpG island 13015	within coordinates
Cpgi13016	CpG island 13016	1759 bp proximal
Nlgn1	neuroligin 1	within coordinates
Rr77454	regulatory region 77454	within coordinates
Tssr32829	transcription start site region 32829	359 bp upstream
Tssr32830	transcription start site region 32830	87 bp downstream
Tssr32831	transcription start site region 32831	393 bp downstream
Tssr32832	transcription start site region 32832	417 bp downstream
Tssr32833	transcription start site region 32833	441 bp downstream
Tssr32834	transcription start site region 32834	491 bp downstream
Tssr32835	transcription start site region 32835	521 bp downstream