rs31198736 SNP Detail

Summary

• ID
  rs31198736
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153060954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAG AGGAAAGCGC TTCAGCTAAG
  W
  GACAGAGAAA CCCCCGCACT AGGTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss45007332	mCV24779726	ABI	CRAMUS_MOUSE	f	SNP	T	T	A			A	T
ss60822417	NES16493711	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A			T		T	T
ss145737873	ENSMUSSNP6339718	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A				T
ss320071225	CHEV_1_155032338	CHEVERUD	SCREENING_POP	f	SNP									A			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs31198736					SNP	T	T	A	A	A	A	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822417	NES16493711	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153060954 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	562 bp proximal
Lamc2	laminin, gamma 2	within coordinates
Rr28719	regulatory region 28719	within coordinates
Tssr14250	transcription start site region 14250	803 bp downstream
Tssr14251	transcription start site region 14251	863 bp downstream
Tssr14252	transcription start site region 14252	894 bp downstream
Tssr14253	transcription start site region 14253	917 bp downstream
Tssr14254	transcription start site region 14254	934 bp downstream