rs31198996 SNP Detail

Summary

• ID
  rs31198996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113363399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CATCACTACC ATAACTCAAT TTTCATAGTA TTATGCAATT AATATTTGCT TTTGCCATGA
  GACTATAAGT TCGACAAATG CAACTATCAT GTCTGCCTTT AGAGAGCCTT TACAACACTA
  GAGATGGGTG GATGGATGGA TAGATGGTTA GATTGATGAT GGATGGATAG ATGATTGGAT
  GGATGCATGA TGGATGGATG GATGGATGGA TAGATGGTTA GATTGATGAT GGATGGATAG
  ATGATTGGAT GGATGGATGA TGGATGGATG GATAGATGGT TAGATTGATG ATGGATGGAT
  R
  GATGAATGGA TGATGGATGG ATGGATAGAT GGTTAGATTG ATGATGGATG GATAGATGAT
  TGGATGGATG GATGGATGGA TGGATAGATG GTTAGATTGA TGATAAATGG ATAGATGATT
  GGATGGATGG ATGATGGATG GATGGATAGA TGGTTAGATT GATGATGGAT GGATGGATGG
  ATGGATGATG GATAGATGAT GAATGGATGG ATGATGGATG GATAGATGAT AGATGGATGA
  ATGGATGATG GATGGATGGA TGGTTGGTTG GTTGATGGAT GATGGATGAA TGGGTGTATG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46006469	mCV24770916	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31198996					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113363399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	1470 bp proximal
Rr653859	regulatory region 653859	1408 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	1836 bp upstream
Tssr68625	transcription start site region 68625	1613 bp upstream
Tssr68626	transcription start site region 68626	1675 bp upstream
Tssr68627	transcription start site region 68627	1744 bp upstream
Tssr68628	transcription start site region 68628	1863 bp upstream
Tssr68629	transcription start site region 68629	1882 bp upstream
Tssr68630	transcription start site region 68630	1921 bp upstream
Tssr68631	transcription start site region 68631	1957 bp upstream