rs31199404 SNP Detail

Summary

• ID
  rs31199404
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16047505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACA GTGTAGCTCC TGGGCGCCTC
  S
  GGGCAGACTG GGTGGATGGT GACCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46007926	mCV22939230	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C
ss148383596	ENSMUSSNP6383574	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C
ss322110007	CHEV_7_16898929	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31199404					SNP	G	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16047505 () rs orientation: forward

Symbol	Name	Function Class
Bbc3	BCL2 binding component 3	within coordinates
Cpgi18372	CpG island 18372	428 bp distal
Cpgi18373	CpG island 18373	within coordinates
Rr167075	regulatory region 167075	within coordinates
Rr380460	regulatory region 380460	1519 bp upstream
Tssr64601	transcription start site region 64601	35 bp upstream
Tssr70734	transcription start site region 70734	1155 bp upstream
Tssr70735	transcription start site region 70735	1110 bp upstream
Tssr70736	transcription start site region 70736	389 bp downstream
Tssr70737	transcription start site region 70737	454 bp downstream
Tssr70738	transcription start site region 70738	473 bp downstream