rs31199857 SNP Detail

Summary

• ID
  rs31199857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19191140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGGCAC ATGGAGGCAG
  CATTCGAACC CAAGACTCTG GAACCATGTA CCTCTCTGGC CTGGTTGAAA CCTCCAACTT
  GAAACCTAAG CCAACAGGGG AGAGGGGCAG AGGGGGCGTT ATCTGATATC TACCATATGC
  ATTAGAAACA CAGATAAAGG CCTAAGGCTG TACTCGAGAG ACAGAGGTAG GTGGATCTTG
  R
  TGAGTTCAAG GCTAGCCTGG TCTACCTAGA GGAACTCTTG TCCAAAAACA GAAAGTGTGT
  GGCCGGGCTC TGCGCTGAAG GTGGTGAGAG GGTGGCGGGT GGAGGAGCCG GCATAAGGGA
  AAAGGAATCG GTAAGCTGAC TTTTAGACAC CTGGAAAGCT GTCAGAATTA CAGGAAATGC
  AGGGGAGGGG AGCAGGGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46007742	mCV22659347	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss148476678	ENSMUSSNP323515	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31199857					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19191140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	550 bp proximal
Mark4	MAP/microtubule affinity regulating kinase 4	within coordinates
Rr400149	regulatory region 400149	1541 bp upstream
Rr643146	regulatory region 643146	240 bp proximal
Rr643147	regulatory region 643147	1596 bp proximal
Tssr64858	transcription start site region 64858	1715 bp upstream
Tssr70918	transcription start site region 70918	1457 bp downstream
Tssr70919	transcription start site region 70919	1513 bp downstream
Tssr70920	transcription start site region 70920	1533 bp downstream
Tssr70921	transcription start site region 70921	1564 bp downstream
Tssr70922	transcription start site region 70922	1586 bp downstream