rs31200500 SNP Detail

Summary

• ID
  rs31200500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:105208240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCGCAGA AAGCGAATTA
  GCATCGACAG CACTGGCTTT CATTTAGATT AGAATTACCT CGTCTGGTAC TTTTACATAT
  TCATCGCATT GTAGCGATTG ATGGCTTTTA AATTTCTCCA GAAATCAATC CAGATTATGA
  AACTTGAATA CTTAGTTGTC ACCAACTCAA TATCACTAGT GGGAATAAGG TGTCATTTTC
  R
  TTACATTTCT ATCTGACATT GATTTTTATC CCATGGTGAG GCTCAGACTT GAAGTGGCTC
  CAATCTCCTA AGGAGATTTC CTCAAAGAGC CTTTTACCCC ATTCAGTTTC CAGGTCCTGT
  GGTTCCCGTA CTCCACACAA AGGCAATGCA CGGGGAACCA AAACACAAAG AGTATTCCCT
  AAAACTGGCA CAGCAGCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39265093	mCV24676324	ABI	CRAMUS_MOUSE	f	SNP	G	A					A
ss49359985	NES12571702	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A		A	A	A	A	A	G	A	A	A
ss146760479	ENSMUSSNP4346308	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31200500					SNP	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49359985	NES12571702	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:105208240 () rs orientation: forward

Symbol	Name	Function Class
Gm24280	predicted gene, 24280	623 bp upstream