rs31200653 SNP Detail

Summary

• ID
  rs31200653
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9618507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCACCTAC AAAGCACAGC GTGAGTACAG
  GCTGCACTGA GGGTGCCTCA GTGCTCGGCA ACCCCGCGTG CACCCAGCTG GGCAGGCAGT
  CATCATCGGG ATACTTTACA GAATTCAGAA AAACCACAGT ATTCCCTGGG CTGTCCCTTA
  W
  ACAATGATAG AATGGGATGG TGCAATGTGG CCCAGCTACC ACTAAGGAGA TCTTCCAGAG
  AAGCTAGCCT GCTCTCACAG TGAGACAAGT AGTGTAGACT TTGGTGTCCC TGCGACGACA
  ACATATCGAA GTAACACGTG TATGGGTCTA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45007172	mCV24092610	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss319630702	CHEV_1_9538363	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31200653					SNP	T	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9618507 () rs orientation: forward

Symbol	Name	Function Class
Adhfe1	alcohol dehydrogenase, iron containing, 1	Intron
Rr407600	regulatory region 407600	1735 bp distal
Rr407602	regulatory region 407602	324 bp distal
Rr407603	regulatory region 407603	within coordinates
Rr407604	regulatory region 407604	884 bp proximal
Rrs1	ribosome biogenesis regulator 1	827 bp downstream
Tssr5898	transcription start site region 5898	181 bp downstream
Tssr5899	transcription start site region 5899	157 bp downstream