rs31201290 SNP Detail

Summary

• ID
  rs31201290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146154397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGACTGTA GACTTGCCCA
  ACCCATTGAG ATTGCCGAGT GGAGTGGAGG CGCCGTGGCC CGGGGATGCT GTGCAGTTTT
  ACAGGAGCCG ACAGATTACT TGCTCAAAGG CCAGATAAGG ACGGGCTCTG GGGCAGCTTG
  AAGACTTCCC CGCCCTGATG GAGAGTGGAG ACGACTTGGC ATCCATGTTA AGGTTGCTGA
  Y
  GTGGAGCTAC ATTGTCCAGG GTGAAATCTT AGCTCCACGC CTTACCACTG AGGCACATAC
  CAGGTTTTAG GTGGAAAACC CCTGAAGAAC AAGAGTACCT ATTAAGGCAA GGTCAGGCCA
  AACCCCTGCT TCACACTTAG CATCATCAGA TCCTCGGAAC ATCCGCCTGT GGGTCAGCTT
  CGCTGCCCGT AAGACAAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47027430	NES10840704	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31201290					SNP	C	C	C	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027430	NES10840704	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146154397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13919	CpG island 13919	1687 bp proximal
Ctbs	chitobiase	1807 bp upstream
Rr398117	regulatory region 398117	1671 bp upstream
Rr587028	regulatory region 587028	703 bp distal
Rr587029	regulatory region 587029	1338 bp proximal
Tssr32348	transcription start site region 32348	1825 bp upstream
Tssr32349	transcription start site region 32349	1876 bp upstream