rs31201293 SNP Detail

Summary

• ID
  rs31201293
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146154431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGTGGAG TGGAGGCGCC
  GTGGCCCGGG GATGCTGTGC AGTTTTACAG GAGCCGACAG ATTACTTGCT CAAAGGCCAG
  ATAAGGACGG GCTCTGGGGC AGCTTGAAGA CTTCCCCGCC CTGATGGAGA GTGGAGACGA
  CTTGGCATCC ATGTTAAGGT TGCTGACGTG GAGCTACATT GTCCAGGGTG AAATCTTAGC
  K
  CCACGCCTTA CCACTGAGGC ACATACCAGG TTTTAGGTGG AAAACCCCTG AAGAACAAGA
  GTACCTATTA AGGCAAGGTC AGGCCAAACC CCTGCTTCAC ACTTAGCATC ATCAGATCCT
  CGGAACATCC GCCTGTGGGT CAGCTTCGCT GCCCGTAAGA CAAGGCTGAA AAGCACACCT
  GCTTTACACG GCTCCTACTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47027434	NES10840706	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31201293					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027434	NES10840706	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146154431 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13919	CpG island 13919	1653 bp proximal
Ctbs	chitobiase	1773 bp upstream
Rr398117	regulatory region 398117	1637 bp upstream
Rr587028	regulatory region 587028	737 bp distal
Rr587029	regulatory region 587029	1304 bp proximal
Tssr32348	transcription start site region 32348	1791 bp upstream
Tssr32349	transcription start site region 32349	1842 bp upstream