rs31202171 SNP Detail

Summary

• ID
  rs31202171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146154744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATCCTCG GAACATCCGC
  CTGTGGGTCA GCTTCGCTGC CCGTAAGACA AGGCTGAAAA GCACACCTGC TTTACACGGC
  TCCTACTCTG ATTGGACAGT GAGGGTTCAG TCCAGATCAG AGCCTGAGAG GAAAAGTAGC
  CGAGCAAAAG TCCTTCACCA CCACGTTCAT CAAGCCTTTA AAGGAGGGAC CCTGATAGTG
  Y
  TAACCGTCAG CCTGATGTTG GGCATGCCTA TCTACAATCA AGTTAATTGT GGTGGGGAGA
  CTCTGTCTGC CACTCTGGCT GCACCATTTT CTGAGGTCGT TTCAAGACTG CATTATGAAG
  AGGAAGGCCA GCTCAACATC TGCATGCATG CCTGCATCCT GTTTTCTGAC TGTGACCGGC
  TGCTTCAAGA CCCTGTTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47027442	NES10840710	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31202171					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027442	NES10840710	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146154744 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13919	CpG island 13919	1340 bp proximal
Ctbs	chitobiase	1460 bp upstream
Rr398117	regulatory region 398117	1324 bp upstream
Rr587028	regulatory region 587028	1050 bp distal
Rr587029	regulatory region 587029	991 bp proximal
Tssr32348	transcription start site region 32348	1478 bp upstream
Tssr32349	transcription start site region 32349	1529 bp upstream