rs31202173 SNP Detail

Summary

• ID
  rs31202173
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146155110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACTGTGA CCGGCTGCTT
  CAAGACCCTG TTGCCGTGAC CTCTTTGCCA TAGTAGACTG TACCTTGAAC TGTGAGCCAG
  GAAAAAAAGC TATCTTAGTT ACTTCTTAAT CACAGCCACA GGAAGAGAAA CGAAGACAAG
  AAAGCAAACC TGGTTTCCAG CCTTTCCAGT CTGCCAGGAT TAGAAATATA TTAATTTGTT
  S
  CCGAGTATCC TTTGCTTTCC GCTCTTCTGA GAGAGCTCAG AGAGATCCTT GCTTTGACAA
  CATTTTGGTT CTGGGAAAAG AATTTACATC ATTTAAATTT TTATTGGTGT TTAGGGAGTG
  TACAATAAAT TTAAACTCAT ATGCTATAAT GGGTGTTTTA ATTGTCATTA TGAGTTTAAT
  GACATTCAAT TTCCTTTATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47027444	NES10840619	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31202173					SNP	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027444	NES10840619	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146155110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13919	CpG island 13919	974 bp proximal
Ctbs	chitobiase	1094 bp upstream
Rr398117	regulatory region 398117	958 bp upstream
Rr587028	regulatory region 587028	1416 bp distal
Rr587029	regulatory region 587029	625 bp proximal
Tssr32348	transcription start site region 32348	1112 bp upstream
Tssr32349	transcription start site region 32349	1163 bp upstream