rs31203135 SNP Detail

Summary

• ID
  rs31203135
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146155113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTGACCG GCTGCTTCAA
  GACCCTGTTG CCGTGACCTC TTTGCCATAG TAGACTGTAC CTTGAACTGT GAGCCAGGAA
  AAAAAGCTAT CTTAGTTACT TCTTAATCAC AGCCACAGGA AGAGAAACGA AGACAAGAAA
  GCAAACCTGG TTTCCAGCCT TTCCAGTCTG CCAGGATTAG AAATATATTA ATTTGTTCCC
  R
  AGTATCCTTT GCTTTCCGCT CTTCTGAGAG AGCTCAGAGA GATCCTTGCT TTGACAACAT
  TTTGGTTCTG GGAAAAGAAT TTACATCATT TAAATTTTTA TTGGTGTTTA GGGAGTGTAC
  AATAAATTTA AACTCATATG CTATAATGGG TGTTTTAATT GTCATTATGA GTTTAATGAC
  ATTCAATTTC CTTTATAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47027446	NES10840621	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31203135					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027446	NES10840621	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146155113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13919	CpG island 13919	971 bp proximal
Ctbs	chitobiase	1091 bp upstream
Rr398117	regulatory region 398117	955 bp upstream
Rr587028	regulatory region 587028	1419 bp distal
Rr587029	regulatory region 587029	622 bp proximal
Tssr32348	transcription start site region 32348	1109 bp upstream
Tssr32349	transcription start site region 32349	1160 bp upstream