rs31203137 SNP Detail

Summary

• ID
  rs31203137
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146155261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTCCAGC CTTTCCAGTC
  TGCCAGGATT AGAAATATAT TAATTTGTTC CCGAGTATCC TTTGCTTTCC GCTCTTCTGA
  GAGAGCTCAG AGAGATCCTT GCTTTGACAA CATTTTGGTT CTGGGAAAAG AATTTACATC
  ATTTAAATTT TTATTGGTGT TTAGGGAGTG TACAATAAAT TTAAACTCAT ATGCTATAAT
  K
  GGTGTTTTAA TTGTCATTAT GAGTTTAATG ACATTCAATT TCCTTTATAG CCATAAAGAG
  AATTTTTATT CCTGTTGCTA CTTAAACAGA AGAATTCCCC AAAGAAAATG CCCAAATCTT
  CAAAGTGCGT TCTCCTTCCA GCATTCAGTA CACGCTGAGC AGAGCAATCC AGGTCACACC
  CCCAGGACCT GATGACCCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47027448	NES10840622	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31203137					SNP	G	G	G	G	G	T	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027448	NES10840622	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146155261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13919	CpG island 13919	823 bp proximal
Ctbs	chitobiase	943 bp upstream
Rr398117	regulatory region 398117	807 bp upstream
Rr587028	regulatory region 587028	1567 bp distal
Rr587029	regulatory region 587029	474 bp proximal
Rr587030	regulatory region 587030	1946 bp proximal
Tssr32348	transcription start site region 32348	961 bp upstream
Tssr32349	transcription start site region 32349	1012 bp upstream