rs31203141 SNP Detail

Summary

• ID
  rs31203141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146155389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTTACA TCATTTAAAT
  TTTTATTGGT GTTTAGGGAG TGTACAATAA ATTTAAACTC ATATGCTATA ATGGGTGTTT
  TAATTGTCAT TATGAGTTTA ATGACATTCA ATTTCCTTTA TAGCCATAAA GAGAATTTTT
  ATTCCTGTTG CTACTTAAAC AGAAGAATTC CCCAAAGAAA ATGCCCAAAT CTTCAAAGTG
  Y
  GTTCTCCTTC CAGCATTCAG TACACGCTGA GCAGAGCAAT CCAGGTCACA CCCCCAGGAC
  CTGATGACCC TGTTAGAGCC CCCTTCCCTA TTCTCATAGC CAAAGGAAAG GCTTTTCTTG
  AGGTCATATC TCTCAAGCAA AATCACCGCA CAGAGTTTAT CTTTAAATTC TCTTTATTTA
  ATGCTGGAAA ATCACAATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47027452	NES10840628	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31203141					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027452	NES10840628	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146155389 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13919	CpG island 13919	695 bp proximal
Ctbs	chitobiase	815 bp upstream
Rr398117	regulatory region 398117	679 bp upstream
Rr587028	regulatory region 587028	1695 bp distal
Rr587029	regulatory region 587029	346 bp proximal
Rr587030	regulatory region 587030	1818 bp proximal
Tssr32348	transcription start site region 32348	833 bp upstream
Tssr32349	transcription start site region 32349	884 bp upstream
Tssr32350	transcription start site region 32350	1989 bp upstream