rs31204099 SNP Detail

Summary

• ID
  rs31204099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146155766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATGCTG GAAAATCACA
  ATACACACTT AACCAAACAT CTGGTAAATT GACAATAATA TCACCCGTCC ATTTTACATT
  TTAAAAAATA CCCTGTGTAG AGACTTGGAA AAGAATGGTC TCAAACCGAT TGAAGTTTAA
  AAAAAGAAAA CAGGAGCTCT TGGAGTTTTA CAGTGAACGT ACTATTTACT ACAAGCCAAG
  Y
  ACTGTGCTGA GCTATATTGG CAGGGGTGGG GTGCGGGGAG CAACGCCAAG CAAGAGATTC
  AAAATCAATT GTAAGATGAA TGAGCAGAAA ACGTTCAGAC CACACAATCA TGAAATGGTG
  TAGAGTGATG TAGAGTGATG GAGAGAATAA AAGTGGTAGA GTTACCTGCG AGTTACCCGG
  GTCAAGACTG TTTACCTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47027460	NES10840637	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31204099					SNP	C	C	C	C	C	T	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027460	NES10840637	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146155766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13919	CpG island 13919	318 bp proximal
Ctbs	chitobiase	438 bp upstream
Rr398117	regulatory region 398117	302 bp upstream
Rr587029	regulatory region 587029	within coordinates
Rr587030	regulatory region 587030	1441 bp proximal
Tssr32348	transcription start site region 32348	456 bp upstream
Tssr32349	transcription start site region 32349	507 bp upstream
Tssr32350	transcription start site region 32350	1612 bp upstream