rs31204103 SNP Detail

Summary

• ID
  rs31204103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146155944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTATTTA CTACAAGCCA
  AGCACTGTGC TGAGCTATAT TGGCAGGGGT GGGGTGCGGG GAGCAACGCC AAGCAAGAGA
  TTCAAAATCA ATTGTAAGAT GAATGAGCAG AAAACGTTCA GACCACACAA TCATGAAATG
  GTGTAGAGTG ATGTAGAGTG ATGGAGAGAA TAAAAGTGGT AGAGTTACCT GCGAGTTACC
  Y
  GGGTCAAGAC TGTTTACCTA GCCCTTCCTA GCACTGGAGT GTAAGGAAGA CCCCTGTCAC
  ATCTTACATT TACTCATAGG TAGTGCCCCC AGCAGCCGGG GTGGGATCCC AGTCAATTGG
  CTGCAAGTCC CACTTCTCCA CAAAGTCCAG CATCAGCCCC GCCTTCTAGG GCCCACCTAC
  CAAGCAGCAG GCTGGGTCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47027466	NES10840641	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T		C	C	T
ss136044558	ENSMUSSNP6467519	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31204103					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027466	NES10840641	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146155944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13919	CpG island 13919	140 bp proximal
Ctbs	chitobiase	260 bp upstream
Rr398117	regulatory region 398117	124 bp upstream
Rr587029	regulatory region 587029	within coordinates
Rr587030	regulatory region 587030	1263 bp proximal
Tssr32348	transcription start site region 32348	278 bp upstream
Tssr32349	transcription start site region 32349	329 bp upstream
Tssr32350	transcription start site region 32350	1434 bp upstream