rs31205105 SNP Detail

Summary

• ID
  rs31205105
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146156396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATAGGAC ATCAGGGCCC
  GCCCTTCAAG AGGCGTCATT CCCGCAGCCT CCACCCCAGG CATGGCGCTG TGTGGCCTCC
  CGGAATTCAC TCTGCTGCTG CTGCCGCTGT TGGCACGGCT CTCGGCCGGG GACTGCCCGT
  GCTCCGAGGC TGCTCTCTGC CAACCGATCC GCCACCGTCC CGACTTCGAG GTCAGCACTC
  M
  TTTGCCCGTC GGTCTGATAC TCAAGGCTGT AGAAGTTGTG CGCTCACTGA GTAGCCTTAA
  CCACCAGAGT CTTCCTCTTT TTAGATTTCC TTCAGAGGTT GGGCAACTTC CCAGGCCGCA
  GACTGTGTAA TGCTCCTGCC TCATCAGATT CCCGAGGCCA GCTCCTCCCG CTAACCGCTC
  AGCCACCTGC GGGGAGGGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47027468	NES10840643	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31205105					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027468	NES10840643	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146156396 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13919	CpG island 13919	within coordinates
Ctbs	chitobiase	Intron
Rr398117	regulatory region 398117	28 bp downstream
Rr587029	regulatory region 587029	138 bp distal
Rr587030	regulatory region 587030	811 bp proximal
Tssr32348	transcription start site region 32348	138 bp downstream
Tssr32349	transcription start site region 32349	105 bp downstream
Tssr32350	transcription start site region 32350	982 bp upstream