rs31205526 SNP Detail

Summary

• ID
  rs31205526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66361478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAT TTATTATCTG GATATCAAGG
  R
  TGAATGGACT TATTGGTGAG TTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45007424	mCV24304800	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss144494160	ENSMUSSNP4430354	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss319754077	CHEV_1_66368893	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31205526					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66361478 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	within coordinates
Map2	microtubule-associated protein 2	within coordinates
Rr412442	regulatory region 412442	590 bp distal
Rr412443	regulatory region 412443	within coordinates
Rr412444	regulatory region 412444	771 bp proximal
Tssr7142	transcription start site region 7142	604 bp downstream
Tssr7143	transcription start site region 7143	580 bp downstream
Tssr7144	transcription start site region 7144	563 bp downstream
Tssr7145	transcription start site region 7145	513 bp downstream
Tssr7146	transcription start site region 7146	499 bp downstream
Tssr7147	transcription start site region 7147	458 bp downstream
Tssr7148	transcription start site region 7148	339 bp downstream
Tssr7149	transcription start site region 7149	307 bp downstream
Tssr7150	transcription start site region 7150	275 bp downstream
Tssr7151	transcription start site region 7151	246 bp downstream
Tssr7152	transcription start site region 7152	229 bp downstream
Tssr7153	transcription start site region 7153	200 bp downstream
Tssr7154	transcription start site region 7154	1628 bp upstream