rs31205580 SNP Detail

Summary

• ID
  rs31205580
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146163728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGATAACT GTGTATGTGT ATGTATATGT ATATGTATAT
  GTGAATGTTT ATGGACGCAG CCATATATAT TCAACCAGAA GTGGGAATTC ATGGGTACAC
  W
  GTATCTCACA CACACACACA CACACACACA CACACACACA CACCTCAAGA GCCATTTGTG
  TGGTGGATAG AAAGACTGTA AGAGCCAGAG TTGGGGAGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
ss47027558	NES10840391	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
rs31205580					SNP	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027558	NES10840391	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146163728 () rs orientation: forward

Symbol	Name	Function Class
Ctbs	chitobiase	Intron
Rr587031	regulatory region 587031	1333 bp proximal
Spata1	spermatogenesis associated 1	Intron