rs31205886 SNP Detail

Summary

• ID
  rs31205886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152338179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGAGAACAT AGTCCTGTGT GACAAAGAAA
  CAACCGCGAA GAAAAATGAG TAAATTATTT CACATTACTT AAAAAACAAT GAAAAATATC
  GGAATTCTAT GAAGAATGTT ATGCTGTAAA TCTAATTCTG GTCCAGGAGT GACTCTACTC
  R
  TGCTTCACTT CGTGAGAGAG TGGCTTGATG CTCCCTGCAC TCTGTGTGGC TTCCCGTTCC
  ACAGGGCAGT AGTAGCCTGT GGCCCTGGGC CCAGTGGAGA TGACTGTAGC TGCTGTGCCC
  CAGTTCTTGG CATAAACACA AGCAGTTCCG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49713775	NES13062994	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	G	G	A		A	A	A		G
ss320065977	CHEV_1_154309558	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31205886					SNP	G	A	G	A	G	G	G	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49713775	NES13062994	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152338179 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420465	regulatory region 420465			230 bp distal
Rr420466	regulatory region 420466			within coordinates