rs31205891 SNP Detail

Summary

• ID
  rs31205891
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152337759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTAGGGAG GTCTTAGTGG GAGATAAAGG
  GCTTCCTGCC TGGGCTGGGC TGGGCTGGTC CAGCAGCGCT CTTCTTCCTC TGGGACCCGC
  TGTTGGAAAG ATGGGCCCAG AACATCAAAG GTCAGAGGAA AAGTTTCTCC CTCAGCTGCA
  K
  CCAGGAAGCT GTCCTTTGCT GAGGAAGCCA GAGAACAAAG GGAACTCTAC TCACTGGGAA
  GGAACTGTGG GCCTGCCTTA GCTCTGTGCT TCTATTTTTA GTTACACATG GGTATCTCTG
  CAGAGTCCAT GAAACCACCT TCTCAGTACA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49713781	NES13062988	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	T		T	T	G		G
ss320065971	CHEV_1_154309138	CHEVERUD	SCREENING_POP	f	SNP							G				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31205891					SNP	G	G	G	T	G	T	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49713781	NES13062988	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152337759 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420465	regulatory region 420465			within coordinates
Rr420466	regulatory region 420466			419 bp proximal