rs31206386 SNP Detail

Summary

• ID
  rs31206386
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45016301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GGGACCCCCC TCCCCCTCAC GGTCTCACAG CCTTCTTACT CCCTAAAATA
  S
  CCCCCTGCCC TTGTCACCGT ACAGCCTCCC CCCGCGAGGC CGCAGTCGCC           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss46008428	mCV25291023	ABI	CRAMUS_MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs31206386					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45016301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	within coordinates
Gm45619	predicted gene 45619	1300 bp upstream
Gm71276	predicted gene, 71276	552 bp upstream
Lin7b	lin-7 homolog B, crumbs cell polarity complex component	1014 bp downstream
Mtag2	metastasis associated gene 2	within coordinates
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	within coordinates
Rr400310	regulatory region 400310	66 bp upstream
Rr646419	regulatory region 646419	860 bp distal
Rr646420	regulatory region 646420	174 bp distal
Rr646421	regulatory region 646421	within coordinates
Rr646422	regulatory region 646422	810 bp proximal
Tssr72376	transcription start site region 72376	37 bp upstream