rs31206513 SNP Detail

Summary

• ID
  rs31206513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146165413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTCTTTT TTTCTCTTTT
  TCTTTTCCTT TTTCTTTTTG GAGACAGGGT CTCACTATGT ATGCCCAAAC CAGAGCTTTT
  GAAGATTGCT GCTGGCTTGT GTTCTCTAGT TCATTTTTTC TTTTTTCTAC TTATATCTTT
  TATTTCTAAC AGTTTTATTA TTTTTCTCAT TTGGCTTTTA ACATTTGCTC AATAATGACA
  Y
  GCAAATGTTT GAATTCCTAG GATGACATTT GCACCATTAC AAAGGTCCCT TTCAGGGGGG
  CTCCTTGTAG CGATGCTGCA GGCCATCAAG TGCCCTACAA GGTGATCATG AAGCAGGTAA
  ATGGCTCTGT TTCTGGAAGC CAGTGGAATA AAGACCAGCA AGCTCCCTAT TATAACTACA
  AGGTACATTT TCACAATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
ss47027572	NES10840242	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
rs31206513					SNP	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027572	NES10840242	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146165413 () rs orientation: forward

Symbol	Name	Function Class
Ctbs	chitobiase	Intron
Rr587031	regulatory region 587031	331 bp distal
Spata1	spermatogenesis associated 1	Intron