rs31206567 SNP Detail

Summary

• ID
  rs31206567
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152914944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGAGTCA TCTACATGAC
  AGGCTCTGTA ATGGAGCTGC TAAGGGCTGT TCTTTTTGTT TGTTTGTTTG TTTTTGTTTT
  TTGAGACTGG GTTTCTCTGT GTAGCCCTGG CTGTCCTGGA ACTCACTTTG TAGACCAGGC
  TGGCCTCGAA CTCAGAAATC CGCCTGCCTC TGCCTCCCAA GTGCTGGGAT TAGAGGCATG
  Y
  GCCACCACTG CCCGGCTTGG ACTAAGTCTT ATAAGCAACT TTTTGTGCTT TGTTGTGAGA
  CAGGGTCTCT CTGCACAGCT CTGACTTGCC CACTGAATGC TGGGATTATG GGTGTATCCC
  ACCAACTTGG CTCTAAGTGT TTAATACCCT TAAACAGAGA GAAAGAGCCA GAGAGACAGA
  GAAAGAAAGA GAAAGAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45007264	mCV24633922	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss145736559	ENSMUSSNP5413215	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31206567					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152914944 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420580	regulatory region 420580			988 bp distal
Rr420581	regulatory region 420581			764 bp proximal
Rr420582	regulatory region 420582			1159 bp proximal
Rr420583	regulatory region 420583			1338 bp proximal